I've run into this problem recently where it seems like all the links to other content in my course are opening in a new window. They all seem to have the following attributes added to the link:
class="inline_disabled" target="_blank" rel="noopener noreferrer"
Doing some testing, I've found that if you use the "Link Options" on any internal link, it will automatically change it to treat it like an external link. This is because the URL is converted to a fully qualified URL.

Here's what the code looks like:
<p style="text-align: center;">
<a class="inline_disabled" title="Welcome" href="https://MYSHCOOL.instructure.com/courses/215/modules/1033" target="_blank" rel="noopener noreferrer">Start Here</a>
</p>
<p style="text-align: center;">
<a title="Welcome" href="/courses/215/modules/1033">Start Here Too</a>
</p>
<p style="text-align: center;">
<a title="Welcome" href="/courses/215/modules/1033">Welcome</a>
</p>
The first link (Start Here) was edited using the "Link Options" menu.
The second link (Start Here Too) was created by highlighting the text first, then linking to the module.
The third link was inserted into the page without selecting anything first. If I were to edit this link to give it a better name, the HTML would look like the first (Start Here) link.
Is this supposed to happen like this? My IDs are currently struggling with this issue and although it can be fixed, it's a lot of manual editing of HTML that not all are comfortable with.
Is there a way to prevent this from happening?
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