Hello there, @MMatheas ...
Thanks for the detail and the question. Could you please provide a bit more detail to your question, though? Specifically, I am wondering why you are having many "courses" (each with its own Module) in one Canvas course shell. I'm sure there are reasons for this that I am not aware of which may be of benefit to you and your students, so it would be interesting to know what the goal is to only use just one Canvas course shell. In my opinion, the real solution to this is to use multiple course shells, and enroll your students in each of them. That way, your content is separated out by course shell, and there is no need for your one- or two-letter code you are currently using.
I look forward to hearing back from you so that we can figure out a good way for you to accomplish what you want. Take care...
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