Thank you for your suggestion. I do normally hide the Files from the navigation for students.
But it's also an issue for me as a teacher. I like to unpublish everything in the Modules when I repeat a course. Then I check each item and update as necessary. I publish the items after I've made any updates so I can keep track of what's been done (esp. if there's an assistant working on the site too).
I guess the workaround would be to unpublish all the Module items and then go unpublish all the Files.
Nevertheless, it still seems counterintuitive to have "Unpublish Module and All Items" only unpublish certain types of items.
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