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Hi @steve_shishani I would recommend having a discussion with your Canvas Success Manager; they ought to be able to support this for you. My instincts are that the directory structure is somehow 'virtual' and it should be possible to relocate the courses whilst maintaining their original Canvas IDs.
Where you may get issues is if you have middleware managing the student Information system data transfer to Canvas; there may be a risk of disassociating the sis_data with the target course or directory ....
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